The University of Arizona
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   Home of the Soderlund lab
   The Soderlund lab is part of the BIO5 Institute at the University of Arizona
  Lab | Publications | Grants
   Software
  TCW  Transcriptome computational workbench
Build and query an annotated database with gene ontology and differential expression. Build and query a comparative transcriptome database.
  SyMAP  Synteny mapping and analysis program
Build the synteny between two sequences genomes or a sequenced genome and FPC map. Query and view two or more genomes at a time.
  AW  Allele Workbench for allele-specific expression
A pipeline to compute heterozygous SNPs from RNAseq data. Compute Allele Imbalance (AI). Query and view the results.
  FPC  FingerPrinted Contigs for building physical maps
Compute a physical map from restriction fragments. Query and view the resulting contigs.
   Projects
  Homoptera  Transcritome analysis of various species
  Heterosis  Allele Specific Expression of SNPs for mouse hybrids
  Maize FL cDNA's  27,455 Full Length cDNA's
  Kartchner Cavern  Metagenomics of various regions of the cave
  Transcriptomes: Basil | Ginger-Turmeric | Cotton | Trichomes | Elm
   Supported by
 
BIO5
BIO5
University of Arizona
UA
National Science Foundation
NSF
United States Department of Agriculture
USDA
 
 
Snapshots
Transcriptome results viewSingleTCW
Synteny between 3 genomes SyMAP
Fingerprinted contig with markers FingerPrinted Contigs
Email comments to: www@agcol.arizona.edu