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Home of the Soderlund lab |
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The Soderlund lab is part of the BIO5 Institute at the University of Arizona
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Lab
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| Grants
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Software
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TCW
Transcriptome computational workbench
Build and query an annotated database with gene ontology and differential expression.
Build and query a comparative transcriptome database.
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SyMAP
Synteny mapping and analysis program
Build the synteny between two sequences genomes or a sequenced genome and FPC map.
Query and view two or more genomes at a time.
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AW
Allele Workbench for allele-specific expression
A pipeline to compute heterozygous SNPs from RNAseq data. Compute Allele Imbalance (AI).
Query and view the results.
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FPC
FingerPrinted Contigs for building physical maps
Compute a physical map from restriction fragments. Query and view the resulting contigs.
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Projects |
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SyMAPdb
Synteny of agricultural plants (2018) |
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Heterosis
Allele Specific Expression of SNPs for mouse hybrids |
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Maize FL cDNA's
27,455 Full Length cDNA's
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Kartchner Cavern
Metagenomics of various regions of the cave
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Transcriptomes:
Basil
| Ginger-Turmeric
| Cotton
| Trichomes
| Elm
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Supported by |
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