>>>> ConvertNCBI <<<<
Parameters:
   Project directory: riceA

Processing riceA/GCF_001433935.1_IRGSP-1.0_genomic.fna.gz
Chr1 NC_029256.1       43,270,923
Chr2 NC_029257.1       35,937,250
Chr3 NC_029258.1       36,413,819
Chr4 NC_029259.1       35,502,694
Chr5 NC_029260.1       29,958,434
Chr6 NC_029261.1       31,248,787
Chr7 NC_029262.1       29,697,621
Chr8 NC_029263.1       28,443,022
Chr9 NC_029264.1       23,012,720
Chr10 NC_029265.1      23,207,287
Chr11 NC_029266.1      29,021,106
Chr12 NC_029267.1      27,531,856
Finish writing /genomic.fna                 
A  70,894,399  a 34,723,537
T  70,878,997  t 34,737,543
C  55,653,099  c 25,870,542
G  55,666,118  g 25,880,342
N     118,255
Soft masked: 121,211,964 lower case
Gaps >= 30000: 0

Processing riceA/GCF_001433935.1_IRGSP-1.0_genomic.gff
Process genes....
   Use Genes 28,556  
Process mRNA....
   Number of mRNA 28,556                 
Finish writing /gene.gff                 
Process exons....
   Number of Exons 153,923                      
Finish writing exon.gff                   
                                         
>>Total Types  (col 3)                       
   CDS                   238,915 
   cDNA_match              1,507 
   exon                  333,815 *
   gene                   33,624 *
   intron                      1 
   inverted_repeat             2 
   lnc_RNA                 6,277 
   mRNA                   42,417 *
   pseudogene              1,605 
   pseudogenic_tRNA            3 
   rRNA                      200 
   region                     58 
   sequence_feature          489 
   snRNA                      71 
   snoRNA                    610 
   tRNA                      672 
   transcript              3,840 
>>Gene Source (col 2)
   Gnomon                 31,900
   RefSeq                    235
   cmsearch                  874
   tRNAscan-SE               615
>>Gene gene_biotype=                       
   lncRNA                  3,270 
   misc_RNA                   57 
   protein_coding         28,744 *
   rRNA                      200 
   snRNA                      71 
   snoRNA                    610 
   tRNA                      672 
>>Gene product=
   Unique                 28,556
   Variants               13,836
>>Genes gene_biotype=protein_coding on accepted Source: 
   Written to file        28,556
   On Chromosomes         28,556
   On Scaffold                21
   Not on Chr/Scaf           167
>>Sequences 
     12 chromosomes of  373,245,519 total length
     43 scaffold    of      550,136 total length  -- not written to file
      3 other       of      627,180 total length  -- not written to file
Done