Start Taxonomic UniProt 20-Dec-21 16:47:15 Check Directories Creating directory: projects/DBfasta/UniProt_Dec2021 Creating directory: projects/DBfasta/UniProt_Dec2021/sp_fungi/ Creating directory: projects/DBfasta/UniProt_Dec2021/sp_plants/ Check complete Download SwissProt files 20-Dec-21 16:47:15 Downloading uniprot_sprot_fungi.dat.gz curl complete projects/DBfasta/UniProt_Dec2021/sp_fungi/uniprot_sprot_fungi.dat.gz 0m:10s Downloading uniprot_sprot_plants.dat.gz curl complete projects/DBfasta/UniProt_Dec2021/sp_plants/uniprot_sprot_plants.dat.gz 0m:9s Complete SwissProt download 0m:20s Create FASTA files 20-Dec-21 16:47:36 Create SP FASTA from projects/DBfasta/UniProt_Dec2021/sp_fungi/uniprot_sprot_fungi.dat.gz (Size 52.6Mb) 35,623 of 35,623 written to uniprot_sprot_fungi.fasta Complete SP FASTA file 0m:1s (6Mb) Create SP FASTA from projects/DBfasta/UniProt_Dec2021/sp_plants/uniprot_sprot_plants.dat.gz (Size 53.4Mb) 43,739 of 43,739 written to uniprot_sprot_plants.fasta Complete SP FASTA file 0m:1s (6Mb) Complete create files 0m:3s Complete Taxonomic UniProt 0m:23s (6Mb) Download Full UniProt 20-Dec-21 16:48:18 Check Directories Download SwissProt 20-Dec-21 16:48:18 Creating directory: projects/DBfasta/UniProt_Dec2021/sp_full/ Downloading uniprot_sprot.dat.gz curl complete projects/DBfasta/UniProt_Dec2021/sp_full/uniprot_sprot.dat.gz 0m:56s Complete Full Download 0m:56s Create Full UniProt Fasta 20-Dec-21 16:49:19 Create SP hitID list from selected fasta files 35,623 IDs in uniprot_sprot_fungi.fasta 43,739 IDs in uniprot_sprot_plants.fasta 79,362 sequences will not be written to subset fasta file Complete SP hitID list 0m:0s Create SP FASTA from projects/DBfasta/UniProt_Dec2021/sp_full/uniprot_sprot.dat.gz (Size 625.8Mb) 486,566 of 565,928 written to uniprot_sprot_xxFxxxPxxx.fasta Complete SP FASTA file 0m:17s (17Mb) Complete Full UniProt fasta 0m:18s (7Mb) Start GO processing go_Dec2021 20-Dec-21 16:50:36 UniProt directory: projects/DBfasta/UniProt_Dec2021 GO temporary directory: projects/DBfasta/GO_oboDec2021 URL: http://current.geneontology.org/ontology/ Downloading go-basic.obo curl complete projects/DBfasta/GO_oboDec2021/go-basic.obo 0m:2s 50,757 Total GOs 3,496 Alt GOs 3,472 Obsolete 32,645 Biological 56,021 is_a 5,417 part_of 13,403 Molecular 15,089 is_a 13 part_of 4,709 Cellular 5,128 is_a 2,092 part_of 14 Slims 225 GOs in Slim Complete Load OBO file 0m:1s (19Mb) Loading projects/DBfasta/UniProt_Dec2021 to go_Dec2021 Processing sp_fungi/uniprot_sprot_fungi.dat.gz 35,623 UniProts 31 Obsolete GOs 0m:3s (15Mb) Processing sp_plants/uniprot_sprot_plants.dat.gz 43,739 UniProts 19 Obsolete GOs 0m:4s (15Mb) Processing sp_full/uniprot_sprot.dat.gz 486,566 UniProts 74 Obsolete GOs 79,362 Already in GOdb 0m:55s (15Mb) Totals: GO: 3,513,268 Pfam: 889,988 KEGG: 554,505 EC: 318,075 InterPro: 2,621,448 Compute levels 18,345 Parent-child 833,504 edges for biological_process; max level 18 41,061 edges for cellular_component; max level 14 25,151 edges for molecular_function; max level 12 Add GO level numbers to term table Complete GO Levels 0m:10s (23Mb) Compute ancestors 50,757 GOs to process ancestors 658,497 Ancestor paths Complete ancestors 2m:2s (100Mb) Complete creating GO database go_Dec2021 3m:26s (100Mb) Write projects/AnnoDBs_UniProt_Dec2021.cfg 3 entries written