------ Summary for ./data/seq/cabbE on 09-Jul-26 ------
Summary file: ./data/seq/cabbE/xSummary.log
  Verbose output

Sequence directory: ./data/seq/cabbE
   Brassica_oleracea.BOL.dna_sm.toplevel.fa.gz                File date 23-Jul-2024 17:08
Annotation directory: ./data/seq/cabbE
   Brassica_oleracea.BOL.59.gff3.gz                           File date 23-Jul-2024 17:08

### FASTA sequence file(s)
Example header lines
   Chr:  >C1 dna_sm:chromosome chromosome:BOL:C1:1:43764888:1 REF
   Scaf: >Scaffold00285 dna_sm:scaffold scaffold:BOL:Scaffold00285:1:550871:1 REF

Count prefixes
 32,919 Scaffold
      9 C

Lengths of 11 sequence (includes all chromosomes)
    Length    SeqId
  43,764,888  C1
  52,886,895  C2
  64,984,695  C3
  53,719,093  C4
  46,902,585  C5
  39,822,476  C6
  48,366,697  C7
  41,758,685  C8
  54,679,868  C9
     550,871  Scaffold00285
     360,705  Scaffold00418

#Seqs<length && >=previous
   0<10k   552<100k   40<1M   0<10M   5<50M   <100M

Bases count for all sequence
   A  73,470,451  a  68,910,477
   T  73,494,796  t  68,874,706
   C  43,441,875  c  36,987,039
   G  43,465,652  g  36,970,246
   N         346  n  43,006,919

Summary
      9 Chromosomes    446,885,882
 32,919 Scaffolds       41,736,625
 32,928 Total          488,622,507

### GFF Annotation file(s)
Example lines
C1	brad	gene	1449	1625	.	-	.	ID=gene:Bo1g001000;biotype=protein_coding;gene_id=Bo1g001000;logic_name=brad_maker_pasa
C1	brad	mRNA	1449	1625	.	-	.	ID=transcript:Bo1g001000.1;Parent=gene:Bo1g001000;biotype=protein_coding;tag=Ensembl_canonical;transcript_id=Bo1g001000.1
C1	brad	exon	1449	1625	.	-	.	Parent=transcript:Bo1g001000.1;Name=Bo1g001000.1_exon_1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Bo1g001000.1_exon_1;rank=1
C1	brad	CDS	1449	1625	.	-	0	ID=CDS:Bo1g001000.1;Parent=transcript:Bo1g001000.1;protein_id=Bo1g001000.1

Types
  268,591 CDS                               3 RNase_MRP_RNA                    29 SRP_RNA
        9 chromosome                  269,978 exon                         59,225 gene
       22 lnc_RNA                      59,225 mRNA                          1,361 ncRNA_gene
      121 pre_miRNA                       220 rRNA                         32,919 scaffold
      174 snRNA                           282 snoRNA                          510 tRNA

Gene attribute biotype=values
        5 nontranslating_CDS           59,220 protein_coding

Gene attribute keywords
    59,220 ID                           59,220 biotype                      15,318 description
    59,220 gene_id                      59,220 logic_name

Summary
   59,220 Gene from    59,225 (protein_coding)
   59,220 mRNA from    59,225 (1st mRNA)
  268,591 Exon from   269,978
  268,591 CDS  from   268,591

Input type: Ensembl 'biotype' keyword; gene 'description' keyword
------ Finish summary for ./data/seq/cabbE/ ------